Installing Mars mesoscale model on spirit

Set up environment

Add this in your ~/.bashrc then source the file

 1 module purge
 2 module load intel/2021.4.0
 3 module load intel-mkl/2020.4.304
 4 module load openmpi/4.0.7
 5 module load hdf5/1.10.7-mpi
 6 module load netcdf-fortran/4.5.3-mpi
 7 module load netcdf-c/4.7.4-mpi
 8 declare -x WHERE_MPI=/net/nfs/tools/u20/22.3/PrgEnv/intel/linux-ubuntu20.04-zen2/openmpi/4.0.7-intel-2021.4.0-43fdcnab3ydwu7ycrplnzlp6xieusuz7/bin/
 9 declare -x NETCDF=/scratchu/spiga/les_mars_project_spirit/netcdf_hacks/SPIRIT
10 declare -x NCDFLIB=$NETCDF/lib
11 declare -x NCDFINC=$NETCDF/include

Do not forget to declare the local directory in PATH

1 declare -x PATH=./:$PATH

Set up the installer

Go to your 'data' directory (cd /homedata/_MY_LOGIN_ or cd /data/_MY_LOGIN_) and download the installer with the following command

svn co https://svn.lmd.jussieu.fr/Planeto/trunk/MESOSCALE/LMD_MM_MARS/SIMU

Make sure the installer can be executed

chmod 755 SIMU/meso_install.sh

Make a link (e.g. where you are, in the parent directory of /data) to the main script in this SIMU directory

ln -sf SIMU/meso_install.sh .

Run the installer with a simple display of possible options

./meso_install.sh -h

Install the code

Update to the latest version of installer

cd SIMU
svn update
chmod 755 meso_install.sh
cd ..

Run the installer by providing a name for your specific directory

./meso_install.sh -n DESCRIBE_YOUR_RESEARCH_PROJECT

Special case: In case you do not have a gitlab account, ask for an archive (tar.gz) of the code. Let us assume the name is git-trunk-mesoscale-compile-run-spirit.tar.gz and the file is in the current directory (for instance in /homedata/_MY_LOGIN_) then run the installer with the following command

./meso_install.sh -n DESCRIBE_YOUR_RESEARCH_PROJECT -a git-trunk-mesoscale-compile-run-spirit