Difference between revisions of "Installing Titan mesoscale model on spirit"

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Line 55: Line 55:
 
chmod go-r ~./ssh/id_rsa
 
chmod go-r ~./ssh/id_rsa
 
</syntaxhighlight>
 
</syntaxhighlight>
 +
 +
== Install the code ==
 +
 +
=== Load les_planet_workflow from Git ===
 +
On one of the scratch disks (e.g. scratchu), do:
 +
 +
<syntaxhighlight lang="Bash">
 +
git clone git@gitlab.in2p3.fr:aymeric.spiga/les_mars_project.git les_planet_workflow
 +
</syntaxhighlight>
 +
 +
=== Create a new branch and adapt it to Titan ===
 +
In the les_planet_workflow directory, do:
 +
 +
<syntaxhighlight lang="Bash">
 +
git branch new_branch
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git checkout new_branch
 +
<\syntaxhighlight>
 +
 +
Adapt 0_defining file to Titan.
 +
 +
Run install.sh:
 +
<syntaxhighlight lang="Bash">
 +
./install.sh
 +
<\syntaxhighlight>

Revision as of 15:31, 2 January 2024

Install FCM

On your home, do: 

mkdir TOOLS
cd TOOLS
svn checkout https://forge.ipsl.jussieu.fr/fcm/svn/PATCHED/FCM_V1.2
cd
vi .bash_profile

In your ~/.bash_profile, add: 

export PATH=$PATH:$HOME/TOOLS/FCM_V1.2/bin

Configure your ~/.bashrc

In your ~/bashrc, add: 

# Source global definitions
if [ -f /etc/bashrc ]; then
        . /etc/bashrc
fi

# User specific aliases and functions

ulimit -s unlimited

declare -x PATH=./:$PATH
declare -x WRFIO_NCD_LARGE_FILE_SUPPORT=1

module purge
module load intel/2021.4.0
module load intel-mkl/2020.4.304
module load openmpi/4.0.7
module load hdf5/1.10.7-mpi
module load netcdf-fortran/4.5.3-mpi
module load netcdf-c/4.7.4-mpi
declare -x WHERE_MPI=/net/nfs/tools/u20/22.3/PrgEnv/intel/linux-ubuntu20.04-zen2/openmpi/4.0.7-intel-2021.4.0-43fdcnab3ydwu7ycrplnzlp6xieusuz7/bin/
declare -x NETCDF=/scratchu/spiga/les_mars_project_spirit/netcdf_hacks/SPIRIT
declare -x NCDFLIB=$NETCDF/lib
declare -x NCDFINC=$NETCDF/include

Add private key

If you don't have one already, you need to add a private key file on your home, that corresponds to the public key file you have on GitLab.

To do this, put your id_rsa file in the directory ~/.ssh/. Then, change the rights to the file, so that only you can access and read it: 


chmod go-r ~./ssh/id_rsa

Install the code

Load les_planet_workflow from Git

On one of the scratch disks (e.g. scratchu), do: 

git clone git@gitlab.in2p3.fr:aymeric.spiga/les_mars_project.git les_planet_workflow

Create a new branch and adapt it to Titan

In the les_planet_workflow directory, do:

<syntaxhighlight lang="Bash"> git branch new_branch git checkout new_branch <\syntaxhighlight>

Adapt 0_defining file to Titan.

Run install.sh: <syntaxhighlight lang="Bash"> ./install.sh <\syntaxhighlight>

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