Difference between revisions of "LMDZ XIOS outputs"

Revision as of 12:07, 5 March 2025

You can control many outputs using XIOS (see XIOS_output_controls for details).

Output files

The main output file, equivalent to diagfi.nc is Xhistins.nc. This file is controlled mainly by file_def_physics.xml (the name of the file can be changed too)

Parameter files

iodef.xml
context_pcm_physics.xml
field_def_physics.xml
file_def_physics.xml

XML example files for XIOS can be found in LMDZ.GENERIC/deftank/xios for the generic PCM.

XML example files are different for DYNAMICO. See Controling outputs in the dynamics with DYNAMICO. You will find under deftank/dynamico example files for DYNAMICO with generic physics.

field_def_physics.xml

This file lists the variables available in the model. It should correspond to all variables written by write_output() (see Adding new variables in the physics (physiq_mod/physiq)

file_def_physics.xml

This file (example here) lists the output files you want to write, and which variables to write in it.

WARNING: it should NOT BE CONFUSED with field_def_physics.xml

An example (available at the link above), with the name of the output file and here only one variable (temperature) would look like:

    <file_definition>
         <file id="histins"
              name="Xhistins"
              output_freq="40ts"
              sync_freq="40ts"
              type="one_file"
              time_units="days"
              enabled="true">

              <!-- VARS 3D -->
              <field_group operation="instant"
                           grid_ref="grid_3D_out"
                           freq_op="1ts">
                  <field field_ref="temperature" />
          </field_group>
    </file_definition>

Adding new variables in the physics (physiq_mod/physiq)

If you add fields using the write_output() routine (for example in physiq_mod), you will need to add a corresponding field in field_def_physics.xml. For example,

         call write_output("temperature","temperature","K",zt)

corresponds to

            <field id="temperature"
                   long_name="Atmospheric temperature"
                   unit="K" />

You can automatize the translation fortran->XML via the script UTIL/convert_diagfi_to_xml.py (by pasting the write_output() lines into the fortran_input file read by the script).

You will need to know if the variable is 1D,2D or 3D before putting it in the right section of the field_def_physics.xml file though. As a word of caution, the script parses the line using commas. Please don't use commas in the long names of variables!