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| − | This page follows a manual for installing Pluto [[The DYNAMICO dynamical core|Dynamico]] (use the following link to access the wiki page of Dynamico https://lmdz-forge.lmd.jussieu.fr/mediawiki/Planets/index.php/The_DYNAMICO_dynamical_core ). | + | This page follows a manual for installing Pluto [[The DYNAMICO dynamical core|Dynamico]]. |
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| − | The first step is to compile DYNAMICO using the LMDZ-PLUTO physics. Please refer to [[DYNAMICO with LMDZ physics]] for this step.
| + | You should first follow how to install [[The DYNAMICO dynamical core|Dynamico]], then the [[DYNAMICO with LMDZ physics]] guides. |
| | + | Finally, follow [[LMDZ to DYNAMICO start files]] to convert your usual LMDZ [[The start.nc and startfi.nc input files|start files]] to DYNAMICO start files. You will need the files in '''LMDZ.PLUTO/util/start_archive2icosa''' for that. |
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| − | 1. Install the LMDZ Pluto PCM and newstart
| + | Once you have completed all of these steps, you can run an example DYNAMICO simulation (with a DYNAMCIO startfi) using the *.def and *.xml files in '''datadir/dynamico'''. |
| − | a) make sure you have the datafir and all of the *.def files.
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| − | b) create start.nc and startfi.nc
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| − | 2. Compile start2archive
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| − | a) run : makelmdz_fcm -arch <archive> -d <dimensions (lonxlatxalt)> -p pluto start2archive to create start_archive
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| − | b) run start2archive.e
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| − | c) Copy start archive to your folder
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| − | <pre>
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| − | cp start_archive.nc dynamico_runs
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| − | </pre>
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| − | d) Convert the start archive to netCDF4
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| − | <pre>
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| − | nccopy -k 4 start_archive.nc start_archive_nc4.nc
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| − | </pre>
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| − | 3. Follow [[DYNAMICO with LMDZ physics]], to compile '''icosa_lmdz.exe'''.
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| − | 4. Create an initial conditions files for dynamico by running a dynamico simulation without an initial physics file (startphy_file=false).
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| − | a) In run.def change to run_length=1500, etat_isothermal_temp=200, etat=isothermal and startphy_file=false
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| − | c) run icosa_lmdz.exe
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| − | d) copy the files outputed by icosa_lmdz.exe
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| − | 1. cp restartfi.nc startphy_icosa_ref.nc
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| − | 2. cp restart_icosa.nc start_icosa_ref.nc
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| − | 5. Change the lat x lon files to the icosa grid.
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| − | a) Compile the files in LMDZ.PLUTO/util/startarchive2icosa with the '''compile''' script, which will create '''start_archive2icosa''' and '''rearrange_startphy'''. Copy all the files in your simulation folder, but WARNING: there are some xml files that could overwrite your own files (like iodef.xml).
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| − | b) Create a '''surface_nc4.nc''' based on your topography (could be a symbolic link)
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| − | d) run ./start_archive2icosa as a job (requires a lot of memory) and make sure that iodef.xml is the one for compile.
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| − | e) the script create '''start_icosa_prefinalize.nc''' and '''startfi_prefinalize.nc'''
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| − | f) run '''icosa_finalize.bash'''
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| − | g) TODO change the XIOS and the for startfi0.nc paths in icosa_finalize.bash and run it. It adds and changes variables in the startfiles.
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| − | h) The scripts outputs startfi.nc and start_icosa.nc
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| − | 6. update the tracer name in startfi for each tracer for example: ncrename -v ccn_number_surf,ccn_number startfi.nc
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| − | 7. Run Dynamico simulation
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| − | a) change the iodef.xml to the one in '''deftank/dynamico'''
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| − | b) change in run.def etat0=start_file and add etat0_start_file_colocated=true
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| | [[Category:DYNAMICO]] | | [[Category:DYNAMICO]] |
| | [[Category:Pluto-DYNAMICO]] | | [[Category:Pluto-DYNAMICO]] |
Once you have completed all of these steps, you can run an example DYNAMICO simulation (with a DYNAMCIO startfi) using the *.def and *.xml files in datadir/dynamico.
