Difference between revisions of "Mars Dynamico Installation manual"
(link to dynamico install process) |
(SSO adaptation) |
||
| Line 6: | Line 6: | ||
a) make sure u have the datafir and all of the *.def files. | a) make sure u have the datafir and all of the *.def files. | ||
b) create start.nc and startfi.nc | b) create start.nc and startfi.nc | ||
| − | 2. Compile | + | 2. Compile start2archive with SSO |
| − | a) run : makelmdz_fcm -arch <archive> -d <dimensions (lonxlatxalt)> -p mars | + | a) run : makelmdz_fcm -arch <archive> -d <dimensions (lonxlatxalt)> -p mars start2archive to create start_archive |
| − | b) run | + | b) run start2archive.e --add-sso |
c) cp start_archive.nc to the dynamico_runs folder | c) cp start_archive.nc to the dynamico_runs folder | ||
Latest revision as of 16:01, 13 November 2024
This page follows a manual for installing Mars Dynamico (use the following link to access the wiki page of Dynamico https://lmdz-forge.lmd.jussieu.fr/mediawiki/Planets/index.php/The_DYNAMICO_dynamical_core ).
The first step is to compile DYNAMICO using the LMDZ-MARS physics. Please refer to DYNAMICO with LMDZ physics for this step.
1. Install the LMDZ Mars GCM and newstart
a) make sure u have the datafir and all of the *.def files. b) create start.nc and startfi.nc
2. Compile start2archive with SSO
a) run : makelmdz_fcm -arch <archive> -d <dimensions (lonxlatxalt)> -p mars start2archive to create start_archive b) run start2archive.e --add-sso c) cp start_archive.nc to the dynamico_runs folder
3. Create an initial condiations files for dynamico by running a dynamico simulation without the physics.
a) Copy from ICOSA_LMDZ/bin/icosa_lmdz.exe to a dynamico_runs folder (you should have followed DYNAMICO with LMDZ physics first, to compile icosa_lmdz.exe). b) Copy the xml files and the start files and the def files in the dynamico_runs directory and have access to the datadir. input file start_archive.nc need be converted to NetCDF4 format nccopy -k 4 start_archive.nc start_archive_nc4.nc
4. run dynamic.
a) In run_icosa.def change to run_length=1500, etat_isothermal_temp=200, etat=isothermal and startphy_file=false(not start_file)
b) copy datadir to the running directory
c) run icosa_lmdz.exe
d) copy the files outputed by icosa_lmdz.exe
1. cp restartfi.nc startphy_icosa_ref.nc
2. cp restart_icosa.nc start_icosa_ref.nc
5. move to LMDZ.mars/util/startarchive2icosa then change compile script to adapt for the right location of XIOS and run compile u should get start_archive2icosa and rearrange_startphy
a) copy start_archive2icosa and rearrange_startphy to the dynamico_runs folder. b) Create surface_nc4.nc and copy it dynamico_runs folder c) source arch.env d) run ./start_archive2icosa as a job (requires a lot of memory) and make sure that Iodef.xml is the one for compile. e) the script create start_icosa_prefinalize.nc and startfi_prefinalize.nc f) copy icosa_finalize script form /trunk/LMDZ.MARS/util/startarchive2icosa/icosa_finalize.bash to dynamico_runs folder g) change the XIOS and the for startfi0.nc paths in icosa_finalize.bash and run it. It adds and changes variables in the startfiles. h) The scripts outputs startfi.nc and start_icosa.nc
6. update the tracer name in startfi for each tracer for example: ncrename -v ccn_number_surf,ccn_number startfi.nc
7. Run Dynamico simulation
a) change the iodef.xml b) change in run_icosa.def etat0=start_file and add etat0_start_file_colocated=true
