WhatIs: The makelmdz fcm script - Historique des versions

Emillour le 21 mars 2022 à 10:43

2022-03-21T10:43:23Z

Emillour : /* The makelmdz_fcm script to compile LMDZ */

2022-03-21T09:52:59Z

‎The makelmdz_fcm script to compile LMDZ

Emillour le 25 novembre 2021 à 09:13

2021-11-25T09:13:06Z

Lfairhead : Page créée avec « == The makelmdz_fcm script to compile LMDZ == The makelmdz_fcm script is the bash script that you use to compile LMDZ. This is where one sets various options (e.g which p... »

2021-01-23T18:55:24Z

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== The makelmdz_fcm script to compile LMDZ ==

The makelmdz_fcm script is the bash script that you use to compile LMDZ. This is where one sets various options (e.g which physics package to compile the model with, what grid resolution to use, etc.).

To list available options, run "makelmdz_fcm -h", which should return something like:

Usage :
makelmdz_fcm [options] -arch nom_arch exec
[-h] : brief help
[-d [[IMx]JMx]LM] : IM, JM, LM are the dimensions in x, y, z (default: 96x72x19)
[-p PHYS] : set of physical parametrizations (in libf/phyPHYS), (default: lmd)
[-prod / -dev / -debug] : compilation mode production (default) / developement / debug
[-c false/MPI1/OMCT] : coupling with ocean model : MPI1/OMCT/false (default: false)
[-v false/orchidee2.0/orchidee1.9/true] : version of the vegetation model to include (default: false)
false : no vegetation model
orchidee2.1 : compile using ORCHIDEE 2.1 (or more recent version)
orchidee2.0 : compile using ORCHIDEE 2.0
orchidee1.9 : compile using ORCHIDEE up to the version including OpenMP in ORCHIDEE : tag 1.9-1.9.5(version AR5)-1.9.6
true : (obsolete; for backward compatibility) use ORCHIDEE tag 1.9-1.9.6
[-chimie INCA/false] : with INCA chemistry model or without (default: false)
[-cosp true/false] : compile with/without cosp package (default: false)
[-cosp2 true/false] : compile with/without cosp2 package (default: false)
[-cospv2 true/false] : compile with/without cospv2 package (default: false)
[-sisvat true/false] : compile with/without sisvat package (default: false)
[-rrtm true/false] : compile with/without rrtm package (default: false)
[-dust true/false] : compile with/without the dust package by Boucher and co (default: false)
[-strataer true/false] : compile with/without the strat aer package by Boucher and co (default: false)
[-parallel none/mpi/omp/mpi_omp] : parallelism (default: none) : mpi, openmp or mixted mpi_openmp
[-g GRI] : grid configuration in dyn3d/GRI_xy.h (default: reg, inclues a zoom)
[-io ioipsl/mix/xios] : Input/Output library (default: ioipsl)
[-include INCLUDES] : extra include path to add
[-cpp CPP_KEY] : additional preprocessing definitions
[-adjnt] : adjoint model, not operational ...
[-mem] : reduced memory dynamics (if in parallel mode)
[-filtre NOMFILTRE] : use filtre from libf/NOMFILTRE (default: filtrez)
[-link LINKS] : additional links with other libraries
[-j n] : active parallel compiling on ntask
[-full] : full recompiling
[-libphy] : only compile physics package (no dynamics or main program)
[-fcm_path path] : path to the fcm tool (default: tools/fcm/bin)
[-ext_src path] : path to an additional set of routines to compile with the model
[-arch_path path] : path to architecture files (default: arch)
-arch nom_arch : target architecture
exec : executable to build

The user must at the very least provide the name of the executable (typically "gcm") and the mandatory option "-arch" with the target architecture name (e.g. "local" or "gfortran_CICLAD").

As LMDZ works on a fixed grid (set when compiling), option "-d" is also almost always used to specify the number of grid points iimxjjmxlllm (where iim is the number of points along longitude, jjm is the number of points along latitude and llm the number of atmospheric layers).

13/05/2020

[[Category:WhatIs]]

@@ Ligne 54 : / Ligne 54 : @@
 <pre>-d IMxJMxLM</pre>
 As LMDZ works on a fixed grid (set when compiling), option "-d" is also almost always used to specify the number of grid points iimxjjmxlllm (where iim is the number of points along longitude, jjm is the number of points along latitude and llm the number of atmospheric layers).
 If compiling the 1D model, then only the number of layers (llm) needs be specified, e.g. <code>-d 78</code> to compile <code>lmdz1d</code>.
 <pre>-j n</pre>
 With this option one can speed up compilation by letting <code>make</code> compile simultaneously (and if possible) up to <code>n</code> routines in parallel (note that this "parallel compilation" has nothing to do with the code being compiled for serial or parallel use as specified via option <code>-parallel ...</code>). In practice using <code>-j 8</code> or <code>-j 4</code> works well.
 <pre>-full</pre>

@@ Ligne 5 : / Ligne 5 : @@
 To list available options, run "makelmdz_fcm -h", which should return something like:
 <pre>
 makelmdz_fcm [options] -arch nom_arch exec
 [-h]                       : brief help
@@ Ligne 50 : / Ligne 51 : @@
 The user must at the very least provide the name of the executable (typically "gcm")  and the mandatory option "-arch" with the target architecture name (e.g. "local" or "gfortran_CICLAD").
 As LMDZ works on a fixed grid (set when compiling), option "-d" is also almost always used to specify the number of grid points iimxjjmxlllm (where iim is the number of points along longitude, jjm is the number of points along latitude and llm the number of atmospheric layers).
-/11/2021
+<pre>-j n</pre>
 [[Category:WhatIs]]

@@ Ligne 4 : / Ligne 4 : @@
 To list available options, run "makelmdz_fcm -h", which should return something like:
+<pre>
- Usage :
+makelmdz_fcm [options] -arch nom_arch exec
- makelmdz_fcm [options] -arch nom_arch exec
+[-h]                       : brief help
- [-h]                       : brief help
+[-d [[IMx]JMx]LM]          : IM, JM, LM are the dimensions in x, y, z (default: 96x72x19)
- [-d [[IMx]JMx]LM]          : IM, JM, LM are the dimensions in x, y, z (default: 96x72x19)
+[-p PHYS]                  : set of physical parametrizations (in libf/phyPHYS), (default: lmd)
- [-p PHYS]                  : set of physical parametrizations (in libf/phyPHYS), (default: lmd)
+[-prod / -dev / -debug]    : compilation mode production (default) / developement / debug
- [-prod / -dev / -debug]    : compilation mode production (default) / developement / debug
+[-c false/MPI1/OMCT]       : coupling with ocean model : MPI1/OMCT/false (default: false)
- [-c false/MPI1/OMCT]       : coupling with ocean model : MPI1/OMCT/false (default: false)
+[-v false/orchidee2.0/orchidee1.9/true] : version of the vegetation model to include (default: false)
            false       : no vegetation model
            orchidee2.1 : compile using ORCHIDEE 2.1 (or more recent version)
@@ Ligne 18 : / Ligne 17 : @@
            orchidee1.9 : compile using ORCHIDEE up to the version including OpenMP in ORCHIDEE : tag 1.9-1.9.5(version AR5)-1.9.6
            true        : (obsolete; for backward compatibility) use ORCHIDEE tag 1.9-1.9.6
- [-chimie INCA/false]       : with INCA chemistry model or without (default: false)
+[-chimie INCA/false]       : with INCA chemistry model or without (default: false)
- [-cosp true/false]    : compile with/without cosp package (default: false)
+[-cosp true/false]    : compile with/without cosp package (default: false)
- [-cosp2 true/false]    : compile with/without cosp2 package (default: false)
+[-cosp2 true/false]    : compile with/without cosp2 package (default: false)
- [-cospv2 true/false]    : compile with/without cospv2 package (default: false)
+[-cospv2 true/false]    : compile with/without cospv2 package (default: false)
- [-sisvat true/false]  : compile with/without sisvat package (default: false)
+[-inlandsis true/false]  : compile with/without inlandsis package (default: false)
- [-rrtm true/false]    : compile with/without rrtm package (default: false)
+[-rrtm true/false]    : compile with/without rrtm package (default: false)
- [-dust true/false]    : compile with/without the dust package by Boucher and co (default: false)
+[-rad old/rrtm/ecrad]    : compile with old/rrtm/ecrad radiatif code (default: old)
- [-strataer true/false]    : compile with/without the strat aer package by Boucher and co (default: false)
+[-dust true/false]    : compile with/without the dust package by Boucher and co (default: false)
- [-parallel none/mpi/omp/mpi_omp] : parallelism (default: none) : mpi, openmp or mixted mpi_openmp
+[-strataer true/false]    : compile with/without the strat aer package by Boucher and co (default: false)
- [-g GRI]                   : grid configuration in dyn3d/GRI_xy.h  (default: reg, inclues a zoom)
+[-isotopes true/false]    : compile with/without water isotopes in the physics
- [-io ioipsl/mix/xios]                   : Input/Output library (default: ioipsl)
+[-isoverif true/false]    : compile with/without verifications for water isotopes in the physics
- [-include INCLUDES]        : extra include path to add
+[-diagiso true/false]    : compile with/without special diagnostics for water isotopes in the physics
- [-cpp CPP_KEY]             : additional preprocessing definitions
+[-isotrac true/false]    : compile with/without tracers of water isotopes in the physics
- [-adjnt]                   : adjoint model, not operational ...
+[-parallel none/mpi/omp/mpi_omp] : parallelism (default: none) : mpi, openmp or mixted mpi_openmp
- [-mem]                     : reduced memory dynamics (if in parallel mode)
+[-g GRI]                   : grid configuration in dyn3d/GRI_xy.h  (default: reg, inclues a zoom)
- [-filtre NOMFILTRE]        : use filtre from libf/NOMFILTRE (default: filtrez)
+[-io ioipsl/mix/xios]                   : Input/Output library (default: ioipsl)
- [-link LINKS]              : additional links with other libraries
+[-include INCLUDES]        : extra include path to add
- [-j n]                     : active parallel compiling on ntask
+[-cpp CPP_KEY]             : additional preprocessing definitions
- [-full]                    : full recompiling
+[-adjnt]                   : adjoint model, not operational ...
- [-libphy]                  : only compile physics package (no dynamics or main program)
+[-mem]                     : reduced memory dynamics (obsolete flag; always on in parallel mode)
- [-fcm_path path]           : path to the fcm tool (default: tools/fcm/bin)
+[-filtre NOMFILTRE]        : use filtre from libf/NOMFILTRE (default: filtrez)
- [-ext_src path]            : path to an additional set of routines to compile with the model
+[-link LINKS]              : additional links with other libraries
- [-arch_path path]          : path to architecture files (default: arch)
+[-j n]                     : active parallel compiling on ntask
-  -arch nom_arch            : target architecture
+[-full]                    : full recompiling
   exec                      : executable to build
+</pre>
 The user must at the very least provide the name of the executable (typically "gcm")  and the mandatory option "-arch" with the target architecture name (e.g. "local" or "gfortran_CICLAD").
 As LMDZ works on a fixed grid (set when compiling), option "-d" is also almost always used to specify the number of grid points iimxjjmxlllm (where iim is the number of points along longitude, jjm is the number of points along latitude and llm the number of atmospheric layers).
-/05/2020
+/11/2021
 [[Category:WhatIs]]